Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
UVM | rs112151899 | chr20:30297204 | G/A | 0.000118 | 67 | 27.92 | 8.18 | 7.6 | KM Plot |
UVM | rs112183790 | chr20:30247771 | T/C | 6.07E-5 | 67 | 27.9 | 14.23 | 7.6 | KM Plot |
UVM | rs112187236 | chr20:30377833 | A/T | 6.07E-5 | 67 | 27.9 | 14.23 | 7.6 | KM Plot |
UVM | rs11246932 | chr12:132610313 | T/G | 5.06E-7 | 65 | 31.55 | 23.63 | 0.73 | KM Plot |
UVM | rs11246933 | chr12:132610314 | G/A | 6.95E-7 | 65 | 27.9 | 23.87 | 0.73 | KM Plot |
UVM | rs11246938 | chr12:132623186 | C/T | 4.29E-7 | 67 | 27.92 | 24.87 | 0.73 | KM Plot |
UVM | rs11246939 | chr12:132623225 | C/T | 5.35E-7 | 66 | 27.92 | 23.87 | 0.73 | KM Plot |
UVM | rs11246940 | chr12:132623473 | A/G | 4.29E-7 | 67 | 27.92 | 24.87 | 0.73 | KM Plot |
UVM | rs112516875 | chr20:30408903 | C/CA | 6.07E-5 | 67 | 27.9 | 14.23 | 7.6 | KM Plot |
UVM | rs112754271 | chr20:30376136 | G/T | 6.07E-5 | 67 | 27.9 | 14.23 | 7.6 | KM Plot |
UVM | rs112772945 | chr20:30355173 | CTTTTTCTTT/C | 6.07E-5 | 67 | 27.9 | 14.23 | 7.6 | KM Plot |
UVM | rs11287205 | chr15:40848072 | TC/T | 0.000214 | 67 | 27.88 | 24.87 | 16.78 | KM Plot |
UVM | rs112918456 | chr1:114736437 | C/T | 0.000143 | 64 | 31.55 | 21.27 | 7.6 | KM Plot |
UVM | rs113032742 | chr20:30237333 | C/T | 6.07E-5 | 67 | 27.9 | 14.23 | 7.6 | KM Plot |
UVM | rs113074967 | chr20:30285804 | C/T | 6.07E-5 | 67 | 27.9 | 14.23 | 7.6 | KM Plot |